API Reference

• Command-Line Interface
  • Global Flags
  • Subcommands
  • QC Workflow Note
  • Module Reference
• Core Package
  • Workflow Decorators
  • Workflow I/O Contracts
  • Path Declarations
  • Registry
  • Processing Context
  • Exceptions
  • I/O Utilities
  • Configuration
  • Logging
  • Output System
  • Nipype Integration
  • GPU Utilities
  • Utilities
  • thesis.core
• Workflows
  • HCP Workflow
  • MRtrix3 Workflow
  • Tractography + SynthSeg Meta-Workflow
  • Full-Pipeline Meta-Workflow
  • Preprocess Workflow
  • Registration Workflow
  • SynthSeg Workflow
  • Atlas Workflow
  • Learned Atlas Workflow
  • Atlas-to-Patient Workflow
  • Tract Similarity Analysis Workflow
  • Transform Workflow
  • QC Visualisation Workflow
  • thesis.workflows
  • thesis.workflows.minimal